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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00482g09010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 511aa MW: 56343.9 Da PI: 8.0105 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.7e-39 | 36 | 97 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+++kcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Niben101Scf00482g09010.1 36 PEQSQKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 97 67899*****************************************************9875 PP | |||||||
2 | zf-Dof | 45.4 | 1.7e-14 | 287 | 313 | 37 | 63 |
zf-Dof 37 rryWtkGGalrnvPvGggrrknkksss 63 rryWtkGG+lrnvPvGgg+rknk+sss Niben101Scf00482g09010.1 287 RRYWTKGGTLRNVPVGGGCRKNKRSSS 313 9**********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.7E-33 | 38 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.311 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-25 | 44 | 93 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-7 | 287 | 309 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.8E-9 | 287 | 310 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MDPSNGQHHH QELSSQTLES MLVSTKPQQD KKPKPPEQSQ KCPRCDSSNT KFCYYNNYSL 60 SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSSRST SQDHSINTNA NNALSSLTTP 120 MSYDSSDLSL AFARLQKQGH GHLGIENHNI SFMRNGTNIA PSQIQSGYFD ALRAGLLENP 180 NGFHQNLYYE VGNMGHHVEN GGMGLSNISD QENGSMHYDQ EINSGVTTTT ATTVTTVKQE 240 MCSMARDQGD NRVLWGFPWQ INNGDGNMGT DFDSSRSIWN GVGVFARRYW TKGGTLRNVP 300 VGGGCRKNKR SSSRSTSQDH SINTNANNAL SSLTTPMSYD SSDLSLAFAR LQKQGHGHLG 360 IENHNISFMR NGTNIAPSQI QSGYFDALRA GLLENPNGFH QNLYYEVGNM GHHVENGGMG 420 LSNISDQENG SMHYDQEINS GVTTTTATTV TTVKQEMCSM ARDQGDNRVL WGFPWQINNG 480 DGNMGTDFDS SRSIWNGVGV FARSLPYGLT N |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00392 | DAP | Transfer from AT3G45610 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622795.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
Refseq | XP_016492247.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
TrEMBL | K4C9Q2 | 1e-112 | K4C9Q2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g075370.2.1 | 1e-111 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 8e-33 | TARGET OF MONOPTEROS 6 |